Predict then Propagate: Graph Neural Networks meet Personalized PageRank
Abstract
Neural message passing algorithms for semi-supervised classification on graphs have recently achieved great success. However, for classifying a node these methods only consider nodes that are a few propagation steps away and the size of this utilized neighborhood is hard to extend. In this paper, we use the relationship between graph convolutional networks (GCN) and PageRank to derive an improved propagation scheme based on personalized PageRank. We utilize this propagation procedure to construct a simple model, personalized propagation of neural predictions (PPNP), and its fast approximation, APPNP. Our model's training time is on par or faster and its number of parameters on par or lower than previous models. It leverages a large, adjustable neighborhood for classification and can be easily combined with any neural network. We show that this model outperforms several recently proposed methods for semi-supervised classification in the most thorough study done so far for GCN-like models. Our implementation is available online.
Benchmark Results
Tested on 1 dataset 1 baseline value reported too low
Tables show presented results in global context (best 3 papers + GCN + MLP).
Classic
PubMed
Global leaderboard →Default metric is Accuracy. The paper reports 7 values on Accuracy and 1 value on F1 .
| # | Model | Accuracy ↑ default | F1 ↑ | Paper |
|---|---|---|---|---|
| 1 | LGTL | 0.9518
±
0.0011 | — | |
| 2 | MixHop (LO) | 0.9513
±
0.0038 | — | |
| 3 | GraphSAGE (LO) | 0.9511
±
0.0036 | — | |
| 17 | APPNP | 0.9355
±0.0060 best reported | 0.7966
±
0.0031 | F1
0.7966
±
0.0031 |
| 18 | GCN | 0.9296
±0.0015 best reported | — | F1
— best at pub: Topology Adaptive Graph Convolutional Networks (2017) |
| 20 | GAT | 0.9233
±0.0018 best reported | — | F1
— best at pub: Topology Adaptive Graph Convolutional Networks (2017) |
| 116 | SAGE | 0.8881
±
0.0015 | — | |
| 210 | MLP | 0.8690
±
0.0074 | — | |
| 694 | JK | 0.7788
±
0.0038 | — | F1
— |
| 706 | V. GCN | 0.7765
±
0.0040 | — | F1
— |
| 716 | N-GCN | 0.7743
±
0.0042 | — | F1
— |
| 819 | Bt. FP | 0.7294
±
0.0100 | — | F1
— |
