Masked Label Prediction: Unified Message Passing Model for Semi-Supervised Classification
Abstract
Graph neural network (GNN) and label propagation algorithm (LPA) are both message passing algorithms, which have achieved superior performance in semi-supervised classification. GNN performs feature propagation by a neural network to make predictions, while LPA uses label propagation across graph adjacency matrix to get results. However, there is still no effective way to directly combine these two kinds of algorithms. To address this issue, we propose a novel Unified Message Passaging Model (UniMP) that can incorporate feature and label propagation at both training and inference time. First, UniMP adopts a Graph Transformer network, taking feature embedding and label embedding as input information for propagation. Second, to train the network without overfitting in self-loop input label information, UniMP introduces a masked label prediction strategy, in which some percentage of input label information are masked at random, and then predicted. UniMP conceptually unifies feature propagation and label propagation and is empirically powerful. It obtains new state-of-the-art semi-supervised classification results in Open Graph Benchmark (OGB).
Benchmark Results
Tested on 2 datasets
Tables show presented results in global context (best 3 papers + GCN + MLP).
OGB
| # | Model | Accuracy ↑ | Paper |
|---|---|---|---|
| 1 | Jacobi | 0.8968 | |
| 2 | GPR | 0.8953 | |
| 3 | LEMP4HG | 0.8939 | |
| 4 | SAGE | 0.8933 | |
| 64 | GraphSAINT | 0.8027
±0.0026 | prev best: SIGN: Scalable Inception Graph Neural Networks (2020) best today: Node Feature Extraction by Self-Supervised Multi-scale Neighborhood Prediction (ICLR 2021) |
| 85 | UniMP | 0.8256
±0.0031 | This paper |
| 127 | DeeperGCN | 0.8098
±0.0020 best reported | best today: Graph Attention MLP with Reliable Label Utilization (2021) Difference within reported uncertainty; not counted as underperformance. |
| 165 | GAT-NeighborSampling | 0.7945
±0.0059 | This paper |
| 176 | GAT-Cluster | 0.7923
±0.0078 | This paper |
| 189 | GCN-Cluster | 0.7897
±0.0036 | This paper |
| 351 | MLP | 0.6605
±0.0020 |
| # | Model | ROC-AUC ↑ | Paper |
|---|---|---|---|
| 1 | LD | 0.8942
±0.0007 | |
| 2 | X_WO/LD | 0.8915
±0.0012 | |
| 3 | X_PNE | 0.8894
±0.0014 | |
| 10 | UniMP | 0.8642
±0.0008 | This paper |
| 11 | DeeperGCN | 0.8616
±0.0016 best reported | best today: Training Graph Neural Networks with 1000 Layers (ICML 2021) |
| 13 | DeepGCN | 0.8496
±0.0028 | This paper |
| 15 | MWE-DGCN | 0.8436
±0.0065 | This paper |
| 16 | GraphSAGE | 0.8430 | |
| 41 | GeniePath-BS | 0.7825
±0.0035 | This paper |
| 43 | GaAN | 0.7803
±0.0073 | This paper |
