MuseGNN: Forming Scalable, Convergent GNN Layers that Minimize a Sampling-Based Energy
Abstract
Among the many variants of graph neural network (GNN) architectures capable of modeling data with cross-instance relations, an important subclass involves layers designed such that the forward pass iteratively reduces a graph-regularized energy function of interest. In this way, node embeddings produced at the output layer dually serve as both predictive features for solving downstream tasks (e.g., node classification) and energy function minimizers that inherit transparent, exploitable inductive biases and interpretability. However, scaling GNN architectures constructed in this way remains challenging, in part because the convergence of the forward pass may involve models with considerable depth. To tackle this limitation, we propose a sampling-based energy function and scalable GNN layers that iteratively reduce it, guided by convergence guarantees in certain settings. We also instantiate a full GNN architecture based on these designs, and the model achieves competitive accuracy and scalability when applied to the largest publicly-available node classification benchmark exceeding 1TB in size. Our source code is available at https://github.com/haitian-jiang/MuseGNN.
Benchmark Results
Tested on 2 datasets 3 baseline values reported too low
Tables show presented results in global context (best 3 papers + GCN + MLP).
OGB
| # | Model | Accuracy ↑ | Paper |
|---|---|---|---|
| 1 | Jacobi | 0.8968 | |
| 2 | GPR | 0.8953 | |
| 3 | LEMP4HG | 0.8939 | |
| 4 | SAGE | 0.8933 | |
| 77 | SIGN | 0.8310
±0.0080 best reported | best at pub: PaSca: a Graph Neural Architecture Search System under the Scalable Paradigm (WWW 2022) |
| 94 | SGC | 0.8220
±0.0090 best reported | best at pub: PaSca: a Graph Neural Architecture Search System under the Scalable Paradigm (WWW 2022) |
| 117 | MuseGNN | 0.8123 | This paper |
| 118 | LazyGNN | 0.8121
±0.0021 | This paper |
| 166 | GAT (NS) | 0.7945
±0.0059 | This paper |
| 177 | FreshGNN | 0.7921
±0.0037 | This paper |
| 191 | Cluster-GCN | 0.7897 | This paper |
| 193 | SGFormer (NS) | 0.7894
±0.0025 | This paper |
| 212 | GCN (NS) | 0.7849
±0.0053 | This paper |
| 216 | SAGE (NS) | 0.7829
±0.0016 | This paper |
| 231 | MariusGNN | 0.7695
±0.0024 | This paper |
| 305 | USP | 0.7380
±0.0030 | This paper |
| 331 | GraphFM | 0.7076 | This paper |
| 351 | MLP | 0.6605
±0.0020 |
| # | Model | Accuracy ↑ | Paper |
|---|---|---|---|
| 1 | SGC | 0.7910 best reported | best at pub: Node Feature Extraction by Self-Supervised Multi-scale Neighborhood Prediction (ICLR 2021) best today: Unifews: You Need Fewer Operations for Efficient Graph Neural Networks (ICML 2024) |
| 2 | GAMLP | 0.7036
±0.0002 | |
| 3 | GLEM-GNN | 0.7036
±0.0002 | |
| 27 | MuseGNN | 0.6682 | This paper |
| 35 | SAGE | 0.6644
±0.0017 | |
| 38 | SIGN | 0.6636
±0.0005 best reported | best at pub: Scalable and Adaptive Graph Neural Networks with Self-Label-Enhanced Training (2021) best today: Graph Learning at Scale: Characterizing and Optimizing Pre-Propagation GNNs (2025) |
| 40 | GAT (NS) | 0.6628
±0.0008 | This paper |
| 42 | FreshGNN | 0.6622
±0.0007 | This paper |
| 43 | SAGE (NS) | 0.6620
±0.0013 | This paper |
| 48 | SGFormer (NS) | 0.6601
±0.0037 | This paper |
| 51 | GCN (NS) | 0.6583
±0.0036 | This paper |
| 79 | MariusGNN | 0.6297
±0.0013 | This paper |
| 90 | Cluster-GCN | 0.5335 | This paper |
| 95 | MLP | 0.4960
±0.0030 | |
| 96 | GraphFM | 0.4803 | This paper |
| 100 | LazyGNN | 0.3980
±0.0009 | This paper |
