Sequential Signal Mixing Aggregation for Message Passing Graph Neural Networks
Abstract
Message Passing Graph Neural Networks (MPGNNs) have emerged as the preferred method for modeling complex interactions across diverse graph entities. While the theory of such models is well understood, their aggregation module has not received sufficient attention. Sum-based aggregators have solid theoretical foundations regarding their separation capabilities. However, practitioners often prefer using more complex aggregations and mixtures of diverse aggregations. In this work, we unveil a possible explanation for this gap. We claim that sum-based aggregators fail to "mix" features belonging to distinct neighbors, preventing them from succeeding at downstream tasks. To this end, we introduce Sequential Signal Mixing Aggregation (goldSSMA), a novel plug-and-play aggregation for MPGNNs. goldSSMA treats the neighbor features as 2D discrete signals and sequentially convolves them, inherently enhancing the ability to mix features attributed to distinct neighbors. By performing extensive experiments, we show that when combining goldSSMA with well-established MPGNN architectures, we achieve substantial performance gains across various benchmarks, achieving new state-of-the-art results in many settings. We published our code at
Benchmark Results
Tested on 1 dataset 2 baseline values reported too low
Tables show presented results in global context (best 3 papers + GCN + MLP).
LRGB
| # | Model | MAE ↓ | Paper |
|---|---|---|---|
| 1 | GCN | 0.2421
±0.0016 best reported | best at pub: Where Did the Gap Go? Reassessing the Long-Range Graph Benchmark (TMLR 2023) best today: From Message-Passing to Linearized Graph Sequence Models (2026) |
| 2 | IPR-MPNN | 0.2422
±0.0007 | |
| 3 | TANGO-GPS | 0.2422
±0.0014 | |
| 5 | GIN | 0.2700
±0.0100 | prev best: Transformers are efficient hierarchical chemical graph learners (2023) best today: From Message-Passing to Linearized Graph Sequence Models (2026) |
| 87 | GraphGPS | 0.2500
±0.0005 best reported | best at pub: Graph Triple Attention Network: A Decoupled Perspective (2024) best today: Molecular fingerprints are strong models for peptide function prediction (2025) |
| 141 | GCN + SSMA | 0.2600
±0.0200 | This paper |
| 142 | GAT + SSMA | 0.2600
±0.0100 | This paper |
| 143 | GATv2 + SSMA | 0.2600
±0.0100 | This paper |
| 144 | GIN + SSMA | 0.2600
±0.0200 | This paper |
| 159 | GAT | 0.2700
±0.0100 | prev best: Graph Neural Networks Gone Hogwild (ICLR 2024) |
| 160 | GATv2 | 0.2700
±0.0100 | This paper |
| 161 | GraphGPS + SSMA | 0.2700
±0.0100 | This paper |
| 162 | PNA + SSMA | 0.2700
±0.0300 | This paper |
| 167 | PNA | 0.2800
±0.0100 | This paper |
| 201 | MLP | 0.4351
±0.0008 |
