KDD 2025

Discrepancy-Aware Graph Mask Auto-Encoder

Ziyu Zheng, Yaming Yang, Ziyu Guan, Wei Zhao, Weigang Lu

Main figure for Discrepancy-Aware Graph Mask Auto-Encoder

Abstract

Masked Graph Auto-Encoder, a powerful graph self-supervised training paradigm, has recently shown superior performance in graph representation learning. Existing works typically rely on node contextual information to recover the masked information. However, they fail to generalize well to heterophilic graphs where connected nodes may be not similar, because they focus only on capturing the neighborhood information and ignoring the discrepancy information between different nodes, resulting in indistinguishable node representations. In this paper, to address this issue, we propose a Discrepancy-Aware Graph Mask Auto-Encoder (DGMAE). It obtains more distinguishable node representations by reconstructing the discrepancy information of neighboring nodes during the masking process. We conduct extensive experiments on 17 widely-used benchmark datasets. The results show that our DGMAE can effectively preserve the discrepancies of nodes in low-dimensional space. Moreover, DGMAE significantly outperforms state-of-the-art graph self-supervised learning methods on three graph analytic including tasks node classification, node clustering, and graph classification, demonstrating its remarkable superiority. The code of DGMAE is available at.

Proposed method: DGMAE

Benchmark Results

Tested on 17 datasets 29 baseline values reported too low

Tables show presented results in global context (best 3 papers + GCN + MLP).

Classic

#ModelAccuracy ↑Paper
1
GraphSAGE+CNA
0.9418 ±0.0033
2
GCN+CNA
0.9366 ±0.0048
3
TransformerConv
0.9350 ±0.0058
21
GCN
0.9004
130
BGRL
actual #130 vs paper #599 469 places worse
0.8730 ±0.0010
best reported
actual #130 vs paper #599 469 places worse
paper 0.8110 ±0.0015
paper 0.8110 ±0.0015 Δ at pub 0.0620
177
DGI
actual #177 vs paper #486 309 places worse
0.8630 ±0.0020
best reported
actual #177 vs paper #486 309 places worse
paper 0.8230 ±0.0060
paper 0.8230 ±0.0060 Δ at pub 0.0400
229
DGMAE
0.8493 ±0.0051
This paper
245
Bandana
0.8462 ±0.0037
This paper
276
SEEGERA
actual #276 vs paper #307 31 places worse
0.8430 ±0.0040
best reported
actual #276 vs paper #307 31 places worse
paper 0.8393 ±0.0023

Difference within reported uncertainty; not counted as underperformance.

paper 0.8393 ±0.0023 Δ at pub 0.0037
270
AUG-MAE
0.8430 ±0.0040
This paper
280
GraphMAE
0.8420 ±0.0040
This paper
286
GraphACL
0.8420 ±0.0031
This paper
315
GREET
actual #315 vs paper #315
0.8382 ±0.0048
actual #315 vs paper #315
paper 0.8382 ±0.0048

Improvement within reported uncertainty; not highlighted.

paper 0.8382 ±0.0048 Δ at pub 0.0001
340
NWR-GAE
0.8362 ±0.0161
This paper
724
MLP
0.7768
#ModelAccuracy ↑Paper
1
CNA
0.9575 ±0.0058
2
IS-GIB
0.9390 ±0.0187
3
EERM
0.9112 ±0.0145
44
GCN
0.8033 ±0.0088
66
DGI
actual #66 vs paper #474 408 places worse
0.7890 ±0.0020
best reported
actual #66 vs paper #474 408 places worse
paper 0.7180 ±0.0070
paper 0.7180 ±0.0070 Δ at pub 0.0710
136
BGRL
actual #136 vs paper #536 400 places worse
0.7600 ±0.0020
best reported
actual #136 vs paper #536 400 places worse
paper 0.7122 ±0.0070
paper 0.7122 ±0.0070 Δ at pub 0.0478
209
GraphMAE
actual #209 vs paper #279 70 places worse
0.7436
best reported
actual #209 vs paper #279 70 places worse
paper 0.7340 ±0.0040
paper 0.7340 ±0.0040 Δ at pub 0.0096
239
DGMAE
0.7382 ±0.0064
This paper
258
GraphACL
actual #258 vs paper #258
0.7363 ±0.0022
actual #258 vs paper #258
paper 0.7363 ±0.0022

Improvement within reported uncertainty; not highlighted.

paper 0.7363 ±0.0022 Δ at pub 0.0003
269
Bandana
0.7360 ±0.0016
This paper
302
GREET
actual #302 vs paper #302
0.7322 ±0.0064
actual #302 vs paper #302
paper 0.7322 ±0.0064

Improvement within reported uncertainty; not highlighted.

paper 0.7322 ±0.0064 Δ at pub 0.0014
311
AUG-MAE
0.7320 ±0.0042
This paper
328
SEEGERA
0.7300 ±0.0080
This paper
350
MLP
0.7289 ±0.0010
515
NWR-GAE
0.7145 ±0.0241
This paper
#ModelAccuracy ↑Paper
1
LGTL
0.9518 ±0.0011
2
MixHop (LO)
0.9513 ±0.0038
3
GraphSAGE (LO)
0.9511 ±0.0036
18
GCN
0.9296 ±0.0015
144
BGRL
actual #144 vs paper #456 312 places worse
0.8830 ±0.0010
best reported
actual #144 vs paper #456 312 places worse
paper 0.7999 ±0.0040
paper 0.7999 ±0.0040 Δ at pub 0.0831
204
DGI
actual #204 vs paper #745 541 places worse
0.8708 ±0.0017
best reported
actual #204 vs paper #745 541 places worse
paper 0.7680 ±0.0060
210
MLP
0.8690 ±0.0074
232
GraphMAE
actual #232 vs paper #364 132 places worse
0.8594 ±0.0016
best reported
actual #232 vs paper #364 132 places worse
paper 0.8110 ±0.0040
290
Bandana
0.8353 ±0.0051
This paper
294
NWR-GAE
0.8344 ±0.0092
This paper
300
SEEGERA
actual #300 vs paper #439 139 places worse
0.8301 ±0.0032
best reported
actual #300 vs paper #439 139 places worse
paper 0.8010 ±0.0042
330
GraphACL
actual #330 vs paper #330
0.8202 ±0.0015
actual #330 vs paper #330
paper 0.8202 ±0.0015

Improvement within reported uncertainty; not highlighted.

paper 0.8202 ±0.0015 Δ at pub 0.0002
364
AUG-MAE
0.8112 ±0.0038
This paper
369
DGMAE
0.8110 ±0.0042
This paper
426
GREET
actual #426 vs paper #428 2 places worse
0.8029 ±0.0100
best reported
actual #426 vs paper #428 2 places worse
paper 0.8020 ±0.0075

Difference within reported uncertainty; not counted as underperformance.

paper 0.8020 ±0.0075 Δ at pub 0.0009
#ModelAccuracy ↑Paper
1
GraphTARIF
0.9703 ±0.0019
2
GAT
0.9669 ±0.0014
3
GAT+T
0.9660 ±0.0007
7
SAGE
0.9643 ±0.0027
102
DGMAE
0.9396 ±0.0041
This paper
132
GREET
actual #132 vs paper #288 156 places worse
0.9361 ±0.0035
best reported
actual #132 vs paper #288 156 places worse
paper 0.9245 ±0.0077
paper 0.9245 ±0.0077 Δ at pub 0.0116
146
NWR-GAE
0.9353 ±0.0018
This paper
158
Bandana
actual #158 vs paper #158
0.9344 ±0.0011
actual #158 vs paper #158
paper 0.9344 ±0.0011

Improvement within reported uncertainty; not highlighted.

paper 0.9344 ±0.0011 Δ at pub 0.0004
164
GraphMAE
actual #164 vs paper #195 31 places worse
0.9341 ±0.0010
best reported
actual #164 vs paper #195 31 places worse
paper 0.9319 ±0.0039

Difference within reported uncertainty; not counted as underperformance.

paper 0.9319 ±0.0039 Δ at pub 0.0022
165
AUG-MAE
actual #165 vs paper #174 9 places worse
0.9340 ±0.0080
best reported
actual #165 vs paper #174 9 places worse
paper 0.9334 ±0.0052

Difference within reported uncertainty; not counted as underperformance.

paper 0.9334 ±0.0052 Δ at pub 0.0006
172
BGRL
actual #172 vs paper #231 59 places worse
0.9337 ±0.0021
best reported
actual #172 vs paper #231 59 places worse
paper 0.9287 ±0.0027
paper 0.9287 ±0.0027 Δ at pub 0.0050
175
GraphACL
0.9331 ±0.0019
This paper
213
DGI
actual #213 vs paper #378 165 places worse
0.9309 ±0.0008
best reported
actual #213 vs paper #378 165 places worse
paper 0.9142 ±0.0035
236
SEEGERA
actual #236 vs paper #236
0.9281 ±0.0045
actual #236 vs paper #236
paper 0.9281 ±0.0045

Improvement within reported uncertainty; not highlighted.

paper 0.9281 ±0.0045 Δ at pub 0.0001
390
MLP
0.9128 ±0.0063
#ModelAccuracy ↑Paper
1
GraphTARIF
0.9461 ±0.0017
2
GCN
0.9412 ±0.0008
3
GAT
0.9398 ±0.0022
8
SAGE
0.9351 ±0.0006
63
DGMAE
0.9075 ±0.0047
This paper
79
BGRL
actual #79 vs paper #125 46 places worse
0.9034 ±0.0019
best reported
actual #79 vs paper #125 46 places worse
paper 0.8968 ±0.0031
paper 0.8968 ±0.0031 Δ at pub 0.0066 Δ today 0.0066
92
NWR-GAE
0.9012 ±0.0015
This paper
98
AUG-MAE
actual #98 vs paper #98
0.9008 ±0.0012
actual #98 vs paper #98
paper 0.9008 ±0.0012
paper 0.9008 ±0.0012 Δ at pub 0.0048
100
GraphMAE
actual #100 vs paper #100
0.9002 ±0.0024
actual #100 vs paper #100
paper 0.9002 ±0.0024

Improvement within reported uncertainty; not highlighted.

paper 0.9002 ±0.0024 Δ at pub 0.0014
118
GraphACL
0.8980 ±0.0025
This paper
130
Bandana
actual #130 vs paper #130
0.8962 ±0.0009
actual #130 vs paper #130
paper 0.8962 ±0.0009
189
SEEGERA
actual #189 vs paper #189
0.8839 ±0.0026
actual #189 vs paper #189
paper 0.8839 ±0.0026

Improvement within reported uncertainty; not highlighted.

paper 0.8839 ±0.0026 Δ at pub 0.0009
209
GREET
actual #209 vs paper #209
0.8802 ±0.0058
actual #209 vs paper #209
paper 0.8802 ±0.0058

Improvement within reported uncertainty; not highlighted.

paper 0.8802 ±0.0058 Δ at pub 0.0008
210
DGI
actual #210 vs paper #309 99 places worse
0.8798 ±0.0081
best reported
actual #210 vs paper #309 99 places worse
paper 0.8510 ±0.0055
paper 0.8510 ±0.0055 Δ at pub 0.0288
320
MLP
0.8463
#ModelAccuracy ↑Paper
1
GCN
0.9302 ±0.0011
2
RSE + RGCN (70b)
0.8852 ±0.0019
3
LEMP+T
0.8825
9
SAGE
0.8771
70
DGMAE
0.8146 ±0.0021
This paper
80
GREET
0.8068 ±0.0031
This paper
81
Bandana
0.8058 ±0.0044
This paper
83
AUG-MAE
actual #83 vs paper #83
0.8053 ±0.0034
actual #83 vs paper #83
paper 0.8053 ±0.0034
paper 0.8053 ±0.0034 Δ at pub 0.0883
84
GraphMAE
actual #84 vs paper #84
0.8052 ±0.0032
actual #84 vs paper #84
paper 0.8052 ±0.0032

Improvement within reported uncertainty; not highlighted.

paper 0.8052 ±0.0032 Δ at pub 0.0060
100
BGRL
actual #100 vs paper #117 17 places worse
0.8000 ±0.0010
best reported
actual #100 vs paper #117 17 places worse
paper 0.7936 ±0.0058

Difference within reported uncertainty; not counted as underperformance.

paper 0.7936 ±0.0058 Δ at pub 0.0064 Δ today 0.0064
105
NWR-GAE
0.7983 ±0.0026
This paper
108
GraphACL
actual #108 vs paper #108
0.7966 ±0.0029
actual #108 vs paper #108
paper 0.7966 ±0.0029

Improvement within reported uncertainty; not highlighted.

paper 0.7966 ±0.0029 Δ at pub 0.0039
122
SEEGERA
actual #122 vs paper #122
0.7923 ±0.0045
actual #122 vs paper #122
paper 0.7923 ±0.0045
paper 0.7923 ±0.0045 Δ at pub 0.1343
151
DGI
actual #151 vs paper #220 69 places worse
0.7865 ±0.0690
best reported
actual #151 vs paper #220 69 places worse
paper 0.7579 ±0.0016
paper 0.7579 ±0.0016 Δ at pub 0.0246 Δ today 0.0286
237
MLP
0.7469 ±0.0085

Heterophilic Graphs

#ModelAccuracy ↑Paper
1
P^2GNN
0.9672 ±0.0147
2
DoG
0.9660 ±0.0210
3
GPF-plus
0.9583 ±0.0419
34
MLP
0.9230 ±0.0070
53
GraphSAGE
0.9000 ±0.0365
90
DGMAE
0.8811 ±0.0516
This paper
101
GREET
actual #101 vs paper #186 85 places worse
0.8703 ±0.0236
best reported
actual #101 vs paper #186 85 places worse
paper 0.8270 ±0.0653

Difference within reported uncertainty; not counted as underperformance.

paper 0.8270 ±0.0653 Δ at pub 0.0433 Δ today 0.0433
238
SP-GCL
0.8036 ±0.0564
This paper
302
MaskGAE
actual #302 vs paper #440 138 places worse
0.7604 ±0.0642
best reported
actual #302 vs paper #440 138 places worse
paper 0.6486 ±0.0127
304
DGI
actual #304 vs paper #532 228 places worse
0.7581 ±0.0503
best reported
actual #304 vs paper #532 228 places worse
paper 0.5853 ±0.0298
331
GraphMAE
actual #331 vs paper #568 237 places worse
0.7432 ±0.0456
best reported
actual #331 vs paper #568 237 places worse
paper 0.5514 ±0.0675
paper 0.5514 ±0.0675 Δ at pub 0.1918
356
AUG-MAE
0.7297 ±0.0715
This paper
359
DSSL
actual #359 vs paper #477 118 places worse
0.7273 ±0.0402
best reported
actual #359 vs paper #477 118 places worse
paper 0.6211 ±0.0153
383
GraphACL
0.7108 ±0.0034
This paper
396
NWR-GAE
0.6962 ±0.0666
This paper
405
Bandana
0.6873 ±0.0424
This paper
409
BGRL
actual #409 vs paper #576 167 places worse
0.6841 ±0.0501
best reported
actual #409 vs paper #576 167 places worse
paper 0.5277 ±0.0198
413
SEEGERA
0.6810 ±0.0752
This paper
505
CCA-SSG
0.5989 ±0.0078
This paper
515
GCA
actual #515 vs paper #576 61 places worse
0.5946
best reported
actual #515 vs paper #576 61 places worse
paper 0.5292 ±0.0046
523
VGAE
actual #523 vs paper #580 57 places worse
0.5920
best reported
actual #523 vs paper #580 57 places worse
paper 0.5027 ±0.0221
#ModelAccuracy ↑Paper
1
P^2GNN
0.9541 ±0.0272
2
ACM-GCN
0.9480 ±0.0380
3
RF-GCN
0.9429
24
MLP
0.9136 ±0.0070
88
GREET
actual #88 vs paper #249 161 places worse
0.8514 ±0.0487
best reported
actual #88 vs paper #249 161 places worse
paper 0.7378 ±0.0402
138
SAGE
0.8269
189
DGMAE
0.7865 ±0.0459
This paper
194
SP-GCL
actual #194 vs paper #194
0.7833 ±0.0426
actual #194 vs paper #194
paper 0.7833 ±0.0426
paper 0.7833 ±0.0426 Δ at pub 0.2518
231
GraphMAE
actual #231 vs paper #469 238 places worse
0.7514 ±0.0965
best reported
actual #231 vs paper #469 238 places worse
paper 0.5162 ±0.0645
paper 0.5162 ±0.0645 Δ at pub 0.2352
325
MaskGAE
actual #325 vs paper #538 213 places worse
0.6550 ±0.0744
best reported
actual #325 vs paper #538 213 places worse
paper 0.4324 ±0.0510
328
AUG-MAE
0.6514 ±0.0622
This paper
344
SEEGERA
0.6405 ±0.0484
This paper
394
NWR-GAE
0.5864 ±0.0561
This paper
516
Bandana
0.4684 ±0.0323
This paper
#ModelAccuracy ↑Paper
1
DiGGR
0.4535 ±0.0353
2
TRIGON
0.4402 ±0.0028
3
DoG
0.4320 ±0.0120
42
MLP
0.4026 ±0.0108
68
GraphSAGE
0.3899 ±0.0085
156
DGMAE
0.3661 ±0.0074
This paper
158
GREET
0.3655 ±0.0101
This paper
280
MaskGAE
actual #280 vs paper #417 137 places worse
0.3344 ±0.0034
best reported
actual #280 vs paper #417 137 places worse
paper 0.2632 ±0.0059
paper 0.2632 ±0.0059 Δ today 0.0712
283
AUG-MAE
actual #283 vs paper #417 134 places worse
0.3342 ±0.0038
best reported
actual #283 vs paper #417 134 places worse
paper 0.2636 ±0.0092
paper 0.2636 ±0.0092 Δ today 0.0706
299
GraphMAE
actual #299 vs paper #422 123 places worse
0.3215 ±0.0133
best reported
actual #299 vs paper #422 123 places worse
paper 0.2561 ±0.0122
paper 0.2561 ±0.0122 Δ at pub 0.0336 Δ today 0.0654
309
VGAE
actual #309 vs paper #411 102 places worse
0.3157 ±0.0075
best reported
actual #309 vs paper #411 102 places worse
paper 0.2699 ±0.0156
paper 0.2699 ±0.0156 Δ at pub 0.0144 Δ today 0.0458
335
DGI
actual #335 vs paper #389 54 places worse
0.3067 ±0.0063
best reported
actual #335 vs paper #389 54 places worse
paper 0.2830 ±0.0076
348
NWR-GAE
0.3017 ±0.0017
This paper
351
GraphACL
0.3003 ±0.0013
This paper
356
BGRL
actual #356 vs paper #377 21 places worse
0.2986
best reported
actual #356 vs paper #377 21 places worse
paper 0.2880 ±0.0054
361
GCA
actual #361 vs paper #378 17 places worse
0.2965
best reported
actual #361 vs paper #378 17 places worse
paper 0.2877 ±0.0029
373
SEEGERA
0.2898 ±0.0170
This paper
376
SP-GCL
0.2894 ±0.0069
This paper
389
Bandana
0.2832 ±0.0094
This paper
393
DSSL
actual #393 vs paper #393
0.2815 ±0.0031
actual #393 vs paper #393
paper 0.2815 ±0.0031
paper 0.2815 ±0.0031 Δ at pub 0.0155
400
CCA-SSG
actual #400 vs paper #400
0.2782 ±0.0060
actual #400 vs paper #400
paper 0.2782 ±0.0060
paper 0.2782 ±0.0060 Δ at pub 0.0147
#ModelAccuracy ↑Paper
1
Hetero-S (GAT 8-layer)
0.8693
2
Dir-GNN+CNA
0.8586 ±0.0180
3
GAT
0.8560
16
GraphMAE
actual #16 vs paper #62 46 places worse
0.7950 ±0.0057
best reported
actual #16 vs paper #62 46 places worse
paper 0.6867 ±0.0161
paper 0.6867 ±0.0161 Δ today 0.1083
26
DGMAE
0.7550 ±0.0117
This paper
27
CCA-SSG
actual #27 vs paper #113 86 places worse
0.6241 ±0.0022
actual #27 vs paper #113 86 places worse
paper 0.6241 ±0.0022
paper 0.6241 ±0.0022 Δ at pub 0.0502 Δ today 0.1259
30
MaskGAE
actual #30 vs paper #118 88 places worse
0.7450 ±0.0087
best reported
actual #30 vs paper #118 88 places worse
paper 0.6136 ±0.0088
paper 0.6136 ±0.0088 Δ today 0.1314
37
AUG-MAE
0.7219 ±0.0155
This paper
38
NWR-GAE
0.7204 ±0.0259
This paper
52
GCN
0.7033
61
GraphACL
0.6912 ±0.0024
This paper
81
DSSL
0.6615 ±0.0032
This paper
90
SP-GCL
0.6528 ±0.0053
This paper
95
BGRL
0.6486 ±0.0063
This paper
105
GCA
actual #105 vs paper #105
0.6366 ±0.0032
actual #105 vs paper #105
paper 0.6366 ±0.0032
paper 0.6366 ±0.0032 Δ at pub 0.0272
106
GREET
0.6364 ±0.0126
This paper
114
VGAE
actual #114 vs paper #242 128 places worse
0.6232 ±0.0190
best reported
actual #114 vs paper #242 128 places worse
paper 0.4265 ±0.0127
134
DGI
0.6027 ±0.0070
This paper
169
MLP
0.5429
190
Bandana
0.5072 ±0.0189
This paper
206
SEEGERA
0.4850 ±0.0258
This paper
#ModelAccuracy ↑Paper
1
IBG-NN
0.7763 ±0.0179
2
Dir-GNN+CNA
0.7747 ±0.0128
3
DHGNN
0.7684 ±0.0161
16
DGMAE
0.7247 ±0.0177
This paper
23
MaskGAE
actual #23 vs paper #88 65 places worse
0.6853 ±0.0044
best reported
actual #23 vs paper #88 65 places worse
paper 0.5040 ±0.0080
paper 0.5040 ±0.0080 Δ today 0.1813
29
NWR-GAE
0.6481 ±0.0183
This paper
38
AUG-MAE
actual #38 vs paper #78 40 places worse
0.6257 ±0.0067
best reported
actual #38 vs paper #78 40 places worse
paper 0.5323 ±0.0162
paper 0.5323 ±0.0162 Δ today 0.0934
42
CCA-SSG
actual #42 vs paper #102 60 places worse
0.4676 ±0.0036
actual #42 vs paper #102 60 places worse
paper 0.4676 ±0.0036
paper 0.4676 ±0.0036 Δ at pub 0.0454 Δ today 0.1482
44
GraphMAE
actual #44 vs paper #119 75 places worse
0.4491 ±0.0194
actual #44 vs paper #119 75 places worse
paper 0.4491 ±0.0194
paper 0.4491 ±0.0194 Δ at pub 0.0578 Δ today 0.1622
46
GCN
0.6067
77
GraphACL
0.5405 ±0.0013
This paper
84
SP-GCL
0.5210 ±0.0067
This paper
98
GCA
actual #98 vs paper #98
0.4809 ±0.0021
actual #98 vs paper #98
paper 0.4809 ±0.0021
paper 0.4809 ±0.0021 Δ at pub 0.0587
108
BGRL
actual #108 vs paper #203 95 places worse
0.4624 ±0.0070
best reported
actual #108 vs paper #203 95 places worse
paper 0.3622 ±0.0197
141
VGAE
actual #141 vs paper #242 101 places worse
0.4250 ±0.0135
best reported
actual #141 vs paper #242 101 places worse
paper 0.2913 ±0.0116
paper 0.2913 ±0.0116 Δ at pub 0.0598 Δ today 0.1337
143
GREET
0.4229 ±0.0143
This paper
144
DGI
actual #144 vs paper #255 111 places worse
0.4222 ±0.0063
best reported
actual #144 vs paper #255 111 places worse
paper 0.2644 ±0.0112
160
DSSL
0.4051 ±0.0038
This paper
172
MLP
0.3930 ±0.0079
210
Bandana
0.3570 ±0.0033
This paper
229
SEEGERA
0.3398 ±0.0092
This paper

Heterophily Benchmark

#ModelAccuracy ↑Paper
1
UniGAP
0.6375 ±0.0110
2
H2GCN + HalfHop
0.5961 ±0.0100
3
GraphSAGE + HalfHop
0.5897 ±0.0150
12
SAGE
0.5569 ±0.0023
84
MLP
0.5058
143
DGMAE
0.4560 ±0.0069
This paper
179
GCA
0.4230 ±0.0012
This paper
182
GREET
0.4152 ±0.0064
This paper
183
CCA-SSG
0.4112 ±0.0038
This paper
#ModelROC-AUC ↑Paper
1
BuNN
0.9899 ±0.0016
2
DC-GNN
0.9850 ±0.0021
3
Tango -GPS
0.9839 ±0.0054
42
GraphSAGE
0.9358 ±0.0005
78
DGMAE
0.9072 ±0.0048
This paper
116
GREET
0.8123 ±0.0078
This paper
133
GCA
0.7283 ±0.0056
This paper
141
CCA-SSG
0.7020 ±0.0038
This paper
156
MLP
0.5099 ±0.0147
#ModelROC-AUC ↑Paper
1
Polynormer-r
0.8591 ±0.0074
2
DC-GNN
0.8588 ±0.0081
3
TANGO-GPS
0.8566 ±0.0101
50
GCN
0.8364 ±0.0067
54
DGMAE
0.8348 ±0.0057
This paper
87
GREET
0.8090 ±0.0045
This paper
111
GCA
0.7820 ±0.0042
This paper
136
CCA-SSG
0.7502 ±0.0047
This paper
139
MLP
0.7362 ±0.0020
#ModelROC-AUC ↑Paper
1
NID_GAT
0.9703 ±0.0002
2
NID_GCN
0.9685 ±0.0010
3
UniGAP
0.8421 ±0.0080
16
GCN
0.7902 ±0.0060
31
DGMAE
0.7793 ±0.0098
This paper
74
CCA-SSG
0.7523 ±0.0056
This paper
80
GCA
0.7454 ±0.0032
This paper
88
GREET
0.7323 ±0.0078
This paper
96
MLP
0.7082 ±0.0010

LINKX Benchmarks

#ModelAccuracy ↑Paper
1
DC-GNN
0.8669 ±0.0022
2
M2M-GNN
0.8594 ±0.0040
3
GloGNN
0.8574 ±0.0042
29
GIN
0.8268 ±0.0032
48
DGMAE
0.7669 ±0.0051
This paper
51
MLP
0.7534 ±0.0064
67
CCA-SSG
0.6346 ±0.0036
This paper
70
GCA
0.5967 ±0.0048
This paper
#ModelAccuracy ↑Paper
1
LargeScaleNet
0.6582 ±0.0036
2
S² DirGCN
0.6495 ±0.0033
3
FaberNet
0.6462 ±0.0101
31
GCN
0.4602 ±0.0026
37
DGMAE
0.4341 ±0.0064
This paper
39
GCA
actual #39 vs paper #39
0.4296 ±0.0039
best reported
actual #39 vs paper #39
paper 0.4252 ±0.0025
paper 0.4252 ±0.0025 Δ at pub 0.0044
43
CCA-SSG
actual #43 vs paper #47 4 places worse
0.3951 ±0.0045
actual #43 vs paper #47 4 places worse
paper 0.3951 ±0.0045
paper 0.3951 ±0.0045 Δ at pub 0.0213 Δ today 0.0127
56
MLP
0.3670 ±0.0021
SOTA performance (not significantly different from the best) Proposed method (this paper) Baseline / comparison (this paper) Global context (other papers) Best at pub — reported result worse than the best known when published (best reported in green) Best at pub — reported value improved over the best known when published Improved at pub — later paper surpassed this result Best today — OK at publication; today's leaderboard best is elsewhere